the coronal view of orig). I am
still struggle with same questions as before. I appreciate any suggestion.
Thank you,
Xin Wang
From: Wang, Xin
Sent: Tue 1/13/2009 4:36 PM
To: Douglas N Greve
Cc: freesurfer
Subject: RE: [Freesurfer] reg-feat2anat failed
Sorry
in tkregister2 when
I zoomed in. How can I see other parts of the target and movable pictures?
Thank you,
Xin Wang
From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Tue 1/13/2009 4:19 PM
To: Wang, Xin
Subject: Re: [Freesurfer] reg-feat2anat
sis-b...@nmr.mgh.harvard.edu; freesurfer
Subject: Re: [Freesurfer] reg-feat2anat failed
what did you use as the highres volume in feat? If you want that reg to
work, it has to be a "freesurfer anatomical volume", meaning 256^3, 1mm3
doug
Wang, Xin wrote:
>
> Hello, Freesurfer grou
]
Sent: Tue 1/13/2009 11:27 AM
To: Wang, Xin
Cc: analysis-b...@nmr.mgh.harvard.edu; freesurfer
Subject: Re: [Freesurfer] reg-feat2anat failed
what did you use as the highres volume in feat? If you want that reg to
work, it has to be a "freesurfer anatomical volume", meaning 256^3, 1mm3
as N Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Mon 1/12/2009 4:02 PM
To: Wang, Xin
Cc: analysis-b...@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] reg-feat2anat failed
reg-feat2anat calls fslregister, so they should produce the same
result. There is no need for an "intermediate" volume since
reference points I can use?
Thank you in advance for any suggestion.
Xin wang
-Original Message-
From: Doug Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Mon 12/15/2008 1:26 PM
To: Wang, Xin
Cc: freesurfer
Subject: Re: [Freesurfer] reg-feat2anat failed
There is a flag in the ni
PM
To: Wang, Xin
Cc: freesurfer
Subject: Re: [Freesurfer] reg-feat2anat failed
There is a flag in the nifti header saying whether the qform or sform
are valid, and it looks like your scripts do not set this flag. You can
use mri_convert (the freesurfer program). This will create valid files
: Wang, Xin
Cc: freesurfer
Subject: Re: [Freesurfer] reg-feat2anat failed
Hi Xin, the problem is that neither the sform nor the qform are valid.
Did the message below not appear when you ran tkmedit?
WARNING: neither NIfTI-1 qform or sform are valid
WARNING: your volume will probably be
12/15/2008 1:09 PM
To: Wang, Xin
Cc: freesurfer
Subject: Re: [Freesurfer] reg-feat2anat failed
Hi Xin, the problem is that neither the sform nor the qform are valid.
Did the message below not appear when you ran tkmedit?
WARNING: neither NIfTI-1 qform or sform are valid
WARNING: your volume
Hi Xin, the problem is that neither the sform nor the qform are valid.
Did the message below not appear when you ran tkmedit?
WARNING: neither NIfTI-1 qform or sform are valid
WARNING: your volume will probably be incorrectly oriented
Fix that, and everything will work fine.
doug
Wang, Xin w
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