Re: [Freesurfer] recon-all Flirt Error

2008-01-11 Thread Nick Schmansky
it 'til now. but just > > wondering why i don't see an fsl directory if there is meant > > to be one in the distribution package... > > > > thanks > > sarah > > > > Original message > > >Date: Mon, 26 Nov 2007 19:38:45 -0500 &

Re: [Freesurfer] recon-all Flirt Error

2007-11-28 Thread Nick Schmansky
just > wondering why i don't see an fsl directory if there is meant > to be one in the distribution package... > > thanks > sarah > > Original message > >Date: Mon, 26 Nov 2007 19:38:45 -0500 > >From: Nick Schmansky <[EMAIL PROTECTED]> > >S

Re: [Freesurfer] recon-all Flirt Error

2007-11-28 Thread skenny
sl directory if there is meant to be one in the distribution package... thanks sarah Original message >Date: Mon, 26 Nov 2007 19:38:45 -0500 >From: Nick Schmansky <[EMAIL PROTECTED]> >Subject: Re: [Freesurfer] recon-all Flirt Error >To: Anil Roy <[EMAIL PROTECTED]>

Re: [Freesurfer] recon-all Flirt Error

2007-11-26 Thread Nick Schmansky
Anil, flirt is an FSL utility that is included in the freesurfer distribution in the $FREESURFER_HOME/fsl directory (in bin). Normally, freesurfer will setup a path to it. Make sure it is in your path. Nick On Mon, 2007-11-26 at 16:26 -0600, Anil Roy wrote: > Hello All, > > I wanted to test t

RE: [Freesurfer] recon-all Flirt Error

2007-11-26 Thread Pedro Paulo Oliveira Jr
The FSL library or the path to FSL is missing. regards, Pedro Paulo Oliveira Jr. -- mens. original -- Assunto:[Freesurfer] recon-all Flirt Error De: "Anil Roy" <[EMAIL PROTECTED]> Data: 26/11/2007 22:38 Hello All, I wanted to test the Freesurfer installation by running re

Re: [Freesurfer] recon-all Flirt Error

2007-11-26 Thread Doug Greve
Looks like you don't have FSL installed or it is not in your path. Anil Roy wrote: Hello All, I wanted to test the Freesurfer installation by running recon-all but I received an error saying flirt no found. Can someone point me to the cause of this problem, is it a missing library or some ot