thanks for your reply
Sent from my iPad
> On Jul 31, 2014, at 17:57, Douglas Greve wrote:
>
>
> Hi Mahsa, freesurfer does not come with FSL installed. I would suggest you go
> to the FSL web site and follow their installation instructions. As I
> remember, it is pretty easy.
> doug
>
>
>
Hi Mahsa, freesurfer does not come with FSL installed. I would suggest
you go to the FSL web site and follow their installation instructions.
As I remember, it is pretty easy.
doug
On 7/31/14 8:53 AM, mahsa abadian wrote:
I have installed freesurfer V5 on my system (ubuntu 12.4) and there i
Try
mri_vol2vol --interp nearest --mov aparc+aseg.mgz --regheader --targ
rawavg.mgz --o aparc+aseg.native.nii.gz
Natalia Sanchez wrote:
Hi:
I am using Freesurfer and FSL together. My image dimensions initially
are 256x256x128 in nii.gz format. I convert these images to .mgz using
mri_
ssible to comment out certain lines from the freesurfer setup script.
> I haven't tried that.
>
>
> >From: Stephen Smith <[EMAIL PROTECTED]>
> >To: Don Hagler <[EMAIL PROTECTED]>
> >CC: freesurfer@nmr.mgh.harvard.edu, [EMAIL PROTECTED]
> >Subjec
rvard.edu, [EMAIL PROTECTED]
Subject: RE: [Freesurfer] freesurfer + fsl
Date: Wed, 9 Nov 2005 18:33:55 + (GMT)
Right - but does FreeSurfer actually use those environment variables or
does it just set them up because it's own bundled version of FSL needs
them? If it's the latt
Right - but does FreeSurfer actually use those environment variables or
does it just set them up because it's own bundled version of FSL needs
them? If it's the latter it may just be enough to initialise FreeSurfer
first and FSL second, and then all may be well?
Cheers.
On Tue, 8 Nov 2005,
I forgot to mention that your .cshrc or .bashrc should not automatically
initialize freesurfer or fsl. You would want to set up an alias to do that
selectively per terminal window.
Don Hagler wrote:
I had a similar problem running Linux RedHat E4. It seems that fsl and
freesurfer have inco
