RE: [Freesurfer] Repeated-measures in mris_glm

2006-04-14 Thread Fornito, Alexander
Building 161 Barry St Carlton South Vic 3053 Australia Ph:+61 3 8344 1624 Fax: +61 3 9348 0469 email: [EMAIL PROTECTED] -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Thu 4/13/2006 1:45 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject:

Re: [Freesurfer] Repeated-measures in mris_glm

2006-04-12 Thread Doug Greve
email: [EMAIL PROTECTED] -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED]] Sent: Tue 4/11/2006 11:43 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Repeated-measures in mris_glm Yes, mris_preproc is new with stable. In your FSGD fi

RE: [Freesurfer] Repeated-measures in mris_glm

2006-04-11 Thread Fornito, Alexander
l: [EMAIL PROTECTED] -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Wed 4/12/2006 2:42 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Repeated-measures in mris_glm How did you create the average subject? Is there a T1.mgz i

Re: [Freesurfer] Repeated-measures in mris_glm

2006-04-11 Thread Doug Greve
---Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED]] Sent: Tue 4/11/2006 11:43 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Repeated-measures in mris_glm Yes, mris_preproc is new with stable. In your FSGD file, try specifying the title as a

RE: [Freesurfer] Repeated-measures in mris_glm

2006-04-11 Thread Fornito, Alexander
versity of Melbourne > Levels 2 & 3, Alan Gilbert Building > 161 Barry St > Carlton South Vic 3053 Australia > Ph:+61 3 8344 1624 > Fax: +61 3 9348 0469 > email: [EMAIL PROTECTED] > > > > -Original Message- > From: Doug Greve [mailto:[EMAIL PROTECTED]

RE: [Freesurfer] Repeated-measures in mris_glm

2006-04-10 Thread Doug Greve
9:31 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Repeated-measures in mris_glm There are two ways to do it: 1. You can use DOSS, making each subject it's own class. Then create one "Variable". For a given input, set the variable to eith

RE: [Freesurfer] Repeated-measures in mris_glm

2006-04-10 Thread Fornito, Alexander
D] Sent: Tue 4/11/2006 11:43 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Repeated-measures in mris_glm Yes, mris_preproc is new with stable. In your FSGD file, try specifying the title as a single string without spaces. doug On Tue, 11 Apr 2

RE: [Freesurfer] Repeated-measures in mris_glm

2006-04-10 Thread Doug Greve
ito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Repeated-measures in mris_glm There are two ways to do it: 1. You can use DOSS, making each subject it's own class. Then create one "Variable". For a given input, set the variable to either +1 or -1 depending upo

RE: [Freesurfer] Repeated-measures in mris_glm

2006-04-10 Thread Fornito, Alexander
[EMAIL PROTECTED] -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Tue 4/11/2006 9:31 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Repeated-measures in mris_glm There are two ways to do it: 1. You can use DOSS, making each subje

Re: [Freesurfer] Repeated-measures in mris_glm

2006-04-10 Thread Doug Greve
There are two ways to do it: 1. You can use DOSS, making each subject it's own class. Then create one "Variable". For a given input, set the variable to either +1 or -1 depending upon whether it corresponds to the first or second time point. Then create a contrast as [0 0 0 0 ... 0 0 0 1], w