RE: [Freesurfer] RE: for cortical thickness

2008-12-05 Thread Nick Schmansky
on Drug Abuse - IRP > > Biomedical Research Center > > 251 Bayview Blvd. > > Suite 200 (NIDA) > > Baltimore MD > > 21224 > > Tel: 443-740-2619 > > > -Original Message- > From: Nick Schmansky [mailto:[EMAIL PROTECTED] > Sent: Friday

RE: [Freesurfer] RE: for cortical thickness

2008-12-05 Thread Zhang, Xiaochu (NIH/NIDA) [F]
008 5:10 PM To: Zhang, Xiaochu (NIH/NIDA) [F] Cc: Freesurfer Mailing List Subject: RE: [Freesurfer] RE: for cortical thickness Xiaochu, The dimensions for lh.thickness.fsaverage.mgh are correct, the ones for lh.fsaverage.ROI5.mgh are not. They should be the same (163842x1x1). Did you cre

RE: [Freesurfer] RE: for cortical thickness

2008-12-05 Thread Nick Schmansky
titute on Drug Abuse - IRP > > Biomedical Research Center > > 251 Bayview Blvd. > > Suite 200 (NIDA) > > Baltimore MD > > 21224 > > Tel: 443-740-2619 > > > -Original Message- > From: Nick Schmansky [mailto:[EMAIL PROTECTED] > Sent: F

RE: [Freesurfer] RE: for cortical thickness

2008-12-05 Thread Zhang, Xiaochu (NIH/NIDA) [F]
Bayview Blvd. Suite 200 (NIDA) Baltimore MD 21224 Tel: 443-740-2619 -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: Friday, December 05, 2008 3:51 PM To: Zhang, Xiaochu (NIH/NIDA) [F] Cc: Freesurfer Mailing List Subject: RE: [Freesurfer] RE: for cortical thickness

RE: [Freesurfer] RE: for cortical thickness

2008-12-05 Thread Nick Schmansky
> > > > Xiaochu Zhang PhD > > > > Visiting Research Fellow > > > > Neuroimaging Research Branch > > > > National Institute on Drug Abuse - IRP > > > > Biomedical Research Center > > > > 251 Bayview Blvd. > > &g

RE: [Freesurfer] RE: for cortical thickness

2008-12-05 Thread Zhang, Xiaochu (NIH/NIDA) [F]
EMAIL PROTECTED] Sent: Friday, November 21, 2008 5:15 PM To: Zhang, Xiaochu (NIH/NIDA) [F] Cc: Freesurfer Mailing List; Allison Stevens Subject: RE: [Freesurfer] RE: for cortical thickness Zhang, The web page describing the steps to extract cortical thickness data for your volume-space def

RE: [Freesurfer] RE: for cortical thickness

2008-12-01 Thread Zhang, Xiaochu (NIH/NIDA) [F]
l: 443-740-2619 -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: Friday, November 21, 2008 5:15 PM To: Zhang, Xiaochu (NIH/NIDA) [F] Cc: Freesurfer Mailing List; Allison Stevens Subject: RE: [Freesurfer] RE: for cortical thickness Zhang, The web page describing the s

RE: [Freesurfer] RE: for cortical thickness

2008-11-21 Thread Nick Schmansky
hmansky [mailto:[EMAIL PROTECTED] > Sent: Monday, November 17, 2008 12:59 PM > To: Zhang, Xiaochu (NIH/NIDA) [F] > Cc: Freesurfer Mailing List > Subject: Re: [Freesurfer] RE: for cortical thickness > > Xiaochu, > > I'm putting together a web page describing the step

RE: [Freesurfer] RE: for cortical thickness

2008-11-17 Thread Zhang, Xiaochu (NIH/NIDA) [F]
> 251 Bayview Blvd. > > Suite 200 (NIDA) > > Baltimore MD > > 21224 > > Tel: 443-740-2619 > > > -Original Message- > From: Nick Schmansky [mailto:[EMAIL PROTECTED] > Sent: Monday, November 17, 2008 12:59 PM > To: Zhang, Xiaochu (NIH/NIDA) [

RE: [Freesurfer] RE: for cortical thickness

2008-11-17 Thread Zhang, Xiaochu (NIH/NIDA) [F]
surfer] RE: for cortical thickness Xiaochu, I'm putting together a web page describing the steps taken to get cortical thickness from an ROI defined by a volume mask. Can you send me these two files so that I can make sure the steps work correctly? 1) the ROI mask file (what you are calling &#

Re: [Freesurfer] RE: for cortical thickness

2008-11-17 Thread Nick Schmansky
Xiaochu, I'm putting together a web page describing the steps taken to get cortical thickness from an ROI defined by a volume mask. Can you send me these two files so that I can make sure the steps work correctly? 1) the ROI mask file (what you are calling 'abc.nii') 2) the T1-weighted anatomica