Re: [Freesurfer] zcat issue, lGI processing

2015-11-04 Thread Douglas N Greve
load_mgh.m and load_nifti.m in $FREESURFER_HOME/matlab On 11/04/2015 06:33 AM, Andrews, Derek wrote: > Dear Douglas, > > Thank you for response. To clarify, I need to find out where in the lGI > scripts zcat is being called so that I can change the code to use > something like gunzip. > > Best, De

Re: [Freesurfer] zcat issue, lGI processing

2015-11-04 Thread Andrews, Derek
Dear Douglas, Thank you for response. To clarify, I need to find out where in the lGI scripts zcat is being called so that I can change the code to use something like gunzip. Best, Derek Derek Sayre Andrews, MSc PhD Candidate The Sackler Institute for

Re: [Freesurfer] zcat issue, lGI processing

2015-11-03 Thread Douglas N Greve
you can find out where it is with which zcat On 11/03/2015 07:42 AM, Andrews, Derek wrote: > Hello Freesurfer Support Team, > > I have encountered an issue running recon-all –lgi that I believe is > due to a zcat issue on mac OSx where a .Z is added to the end of the > file name the resultin

[Freesurfer] zcat issue, lGI processing

2015-11-03 Thread Andrews, Derek
Hello Freesurfer Support Team, I have encountered an issue running recon-all -lgi that I believe is due to a zcat issue on mac OSx where a .Z is added to the end of the file name the resulting error looks like this... >> reading filled volume... zcat: can't stat: /Users/dandrews/data/test/120