Re: [Freesurfer] z-test differences from fscalc and mri_glmfit

2013-11-05 Thread Douglas N Greve
When you say that you are getting very different results, what are you comparing exactly? I can't tell what your mri_glmfit command is because it is embedded in a script with lots of variables. Have mercy on me and just give me a simple command line that I don't have to struggle with:) doug

[Freesurfer] z-test differences from fscalc and mri_glmfit

2013-11-05 Thread Jonathan DuBois
Hi All, In a previous post Doug suggested two methods for generating voxel-wise z-score maps, one using glmfit with one subject in one group and the second using fscalc.fsl. Link to post: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2010-June/014673.html I have tried both methods using