Re: [Freesurfer] wrong registration

2013-03-18 Thread Douglas N Greve
Three things: 1. Make sure they are the same subject 2. Make sure they are not left-right reversed 3. Most likely it is that the initial registration failed. This is done with FSL. There are a couple of options: a. If the anat and dti were collected within the same session, you can try runn

[Freesurfer] wrong registration

2013-03-18 Thread stdp82
Hi list, I'm noting that registration of DWI and T1 images for some subject is wrong (in the .mincost the first value is netx to 1.1). Before recall new recon-all, trace-all .. what do you advise me? Stefano ___ Freesurfer mailing list Freesurfer@nmr.m