Re: [Freesurfer] wmparc.mgz transformation

2018-05-07 Thread Douglas N. Greve
Use mni152reg to register to the MNI 152 space. Then use mri_label2vol with --seg wmparc.mgz to convert it into mni space On 04/28/2018 09:28 PM, Rongxiang Tang wrote: > > > Dear All, > > I would like to transform individual wmparc.mgz into MNI space for > each of my subjects. I have tried usin

[Freesurfer] wmparc.mgz transformation

2018-04-28 Thread Rongxiang Tang
External Email - Use Caution Dear All, I would like to transform individual wmparc.mgz into MNI space for each of my subjects. I have tried using this command:mri_vol2vol --targ /data/mri/wmparc.mgz --mov /usr/local/fsl/data/standard/MNI152_T1_2mm.nii.gz --inv --reg /usr/local/