Re: [Freesurfer] wm problems

2012-07-09 Thread Bruce Fischl
Hi Nicole I saw this before and couldn't replicate it. Sure, upload an example and I'll take a look. Hopefully it is something that is resolved in 5.2. Bruce On Mon, 9 Jul 2012, Nicole Senecal wrote: Hi Bruce, It's version 5.1. Thanks for the suggestion about the second problem (surface not

Re: [Freesurfer] wm problems

2012-07-09 Thread Nicole Senecal
Hi Bruce, It's version 5.1. Thanks for the suggestion about the second problem (surface not following wm). For the white matter hypointensity problem (surface follows wm volume, but wm is incorrect; this occurs in several places on multiple subjects), will we just have to delete this manually from

Re: [Freesurfer] wm problems

2012-07-09 Thread Bruce Fischl
Hi Nicole what version are you running? It's hard to diagnose from just the images. In general, if the surface doesn't follow the wm.mgz it means there was a topological defect that was corrected in that region. You can find it and fix it be editing the wm. If you can't find it, upload it and