Re: [Freesurfer] white matter volume in a ROI

2011-10-31 Thread Douglas N Greve
he Mitteilung- > Von: Douglas N Greve > An: dolphinede ; freesurfer > > Verschickt: Mo, 31 Okt 2011 3:20 pm > Betreff: Re: [Freesurfer] white matter volume in a ROI > > Use mri_segstats. You can look in the recon-all.log file in > subject/scripts. Find the call to mri_

Re: [Freesurfer] white matter volume in a ROI

2011-10-31 Thread Douglas N Greve
myaparc ? > Should i use mris_wm_volume? > > Best regards > > Daniel... > > > > > > -Ursprüngliche Mitteilung- > Von: Douglas N Greve > An: dolphinede ; freesurfer > > Verschickt: Di, 25 Okt 2011 5:05 pm > Betreff: Re: [Freesurfer] white ma

Re: [Freesurfer] white matter volume in a ROI

2011-10-25 Thread Douglas N Greve
if i have to > do some more steps to get white matter volume of my annotation and > where i can find it? > > Excuse my numerous questions but I am just a freesurfer-beginner... > > Best regards > > Daniel > > > > > > > > > > -Ursprüngliche Mitteil

Re: [Freesurfer] white matter volume in a ROI

2011-10-24 Thread Douglas N Greve
ung- > Von: Douglas N Greve > An: dolphinede > Cc: freesurfer > Verschickt: Mo, 24 Okt 2011 4:48 pm > Betreff: Re: [Freesurfer] white matter volume in a ROI > > For GM area and volume, you can use mris_anatomical_stats. See the > recent thread on how. For the WM volu

Re: [Freesurfer] white matter volume in a ROI

2011-10-24 Thread Douglas N Greve
For GM area and volume, you can use mris_anatomical_stats. See the recent thread on how. For the WM volume, how would you define the WM volume that corresponds to you label? We have a routine that parcellates WM based on closest proximity to a cortical label. doug dolphin...@aol.com wrote: > De

[Freesurfer] white matter volume in a ROI

2011-10-24 Thread dolphinede
Dear FreeSurfer experts, i have created a ROI in qdec , where i have found a significant correlation between lgi and age. I mapped this ROI to all subjects. I am interested to compare in this ROI the pial-surface area, the grey matter volume and if possible the white matter volume for this