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Thank you very much!
On Wed., Feb. 10, 2021, 10:05 a.m. Douglas N. Greve,
wrote:
> Use mris_anatomical_stats to create an LUT with the -c option. You can
> look in recon-all.cmd for an example. You only need to do one hemi as they
> both will be the
Use mris_anatomical_stats to create an LUT with the -c option. You can
look in recon-all.cmd for an example. You only need to do one hemi as
they both will be the same.
There are four sections of the new LUT: lh cortex, rh cortex, lh WM, and
rh WM. For each one, you replicate the LUT created abo
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Thanks Doug, the commands gave the expected outputs. I used the original
lh and rh BA_exvivo annotations and got the new BA+aseg.mgz and wmBA.mgz
files. Yes, please let me know how to proceed with the new LUT.
On Tue, Feb 9, 2021 at 10:47 AM Doug
Look in the subject/scripts/recon-all.cmd file of one of your subjects.
You will find five mri_surf2volseg commands
Use the 2nd one (the one that creates aparc+aseg.mgz) as your template
and modify it to take your BA annotation and output a "BA+aseg.mgz"
Use the last one ( the one that creates wm
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I am using freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
On Tue, Feb 9, 2021 at 9:55 AM Douglas N. Greve
wrote:
> which version of FS are you using?
>
> On 2/5/2021 10:02 PM, Vinny K wrote:
>
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> Hello,
>
which version of FS are you using?
On 2/5/2021 10:02 PM, Vinny K wrote:
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Hello,
I'd like to obtain white matter parcellations of the Brodmann areas.
I am not certain that the generated wmparc file from recon-all has
this type of parcellation. I was able
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Hello,
I'd like to obtain white matter parcellations of the Brodmann areas. I am
not certain that the generated wmparc file from recon-all has this type of
parcellation. I was able to convert Brodmann area label files to mgz
format using mris_label2a
