Re: [Freesurfer] white and pial surfaces of the hippocampus

2023-03-13 Thread Douglas N. Greve
We do not have a way to generate surfaces for hippocampus. You could play with the subfields, eg, like mri_binarize --i subfields.mgz --match M1 M2 ... --surf lh.hippo --surf-smooth 2 This will build a surface around segments M1, M2, ... you can then view with freeview On 2/28/2023 8:42 AM, Kh

[Freesurfer] white and pial surfaces of the hippocampus

2023-02-28 Thread Khazar Ahmadi
External Email - Use Caution Dear FS experts, I’d like to delineate WM and pial surfaces in the hippocampus and subsequently bin GM layers of it (like the approach that is commonly used for laminar analyses in V1 or other sensory cortices). I think the current output of recon-