Try
mri_binarize --i aparc+aseg.mgz --wm --o wm.mask.mgz
On 08/10/2016 07:21 AM, John Anderson wrote:
> Dear FS experts,
> I need to crate a mask for whole white matter in the brain including
> the cerebellum. Also I need a mask for the whoe gray matter.
> Can I binzarize ( i.e. use mri_binarize
Dear FS experts,
I need to crate a mask for whole white matter in the brain including the cerebellum. Also I need a mask for the whoe gray matter.
Can I binzarize ( i.e. use mri_binarize) and input the files:
wm.seg.mgz from the output of recon-all to create a a mask for global white matter
