ubject: RE: [Freesurfer] weird relabeling with mri_convert
Hi,
Thanks for your response. When I tried that option I got the same results, and
I looked at the output header file and it still said ‘float32.’ I tried
removing the -nc option, but that messed it up worse. None of my other attempts
a
anything else I can try?
Thank you,
David
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Tuesday, February 21, 2012 12:58 AM
To: David Grayson
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] weird relabeling with mri_convert
Try -odt short to stop it from changing the
Try -odt short to stop it from changing the data type to uchar
On Feb 21, 2012, at 12:04 AM, David Grayson wrote:
> Hi freesurfer folks,
>
> I am using mri_convert to reorient my custom cortical parcellation (a nifti
> file generated from an annotation file), and I have run into some unexpe
Hi freesurfer folks,
I am using mri_convert to reorient my custom cortical parcellation (a nifti
file generated from an annotation file), and I have run into some unexpected
blips with some seemingly errant reindexing. Here is the command I am using:
mri_convert -rl FREESURFER/mri/orig/001.mgz
