Yes, the problem is rawavg.mgz. When was it created? How many runs do
you have in this data set? You can also try using your input volume
subject/mri/orig/001.mgz (or what ever it is called). If you only have
one run, then rawavg.mgz should just be a copy of 001.mgz
doug
On 11/12/2012 11:54 AM
Here yu are:mri_info brain.mgzVolume information for brain.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1., 1., 1. type: UCHAR (0) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart
Can you send the result of
mri_info brain.mgz
mri_info rawavg.mgz
doug
On 11/12/2012 10:27 AM, Gabriel Gonzalez Escamilla wrote:
> Dear FS experts,
>
> I'm trying to convert one skull-stripped image from the FS
> segmentation to a nifti in native space, but I'm having some troubles
> with it.
>
Dear FS experts, I'm trying to convert one skull-stripped image from the FS segmentation to a nifti in native space, but I'm having some troubles with it.I'm doing everything with the a to d stepsa) cd /root/trabajo/freesurfer/subjects/s00x/mri/b) mri_vol2vol --interp nearest --mov brain.mgz --targ
