Re: [Freesurfer] using custom surface template

2018-12-20 Thread Bruce Fischl
sounds good. Bruce On Thu, 20 Dec 2018, Jason Tourville wrote: External Email - Use Caution Thanks Bruce. I was considering playing around with doing it both ways...seeing if the parcellation based on our template makes a difference, but sounds like it would be small. If I

Re: [Freesurfer] using custom surface template

2018-12-20 Thread Jason Tourville
External Email - Use Caution Thanks Bruce. I was considering playing around with doing it both ways...seeing if the parcellation based on our template makes a difference, but sounds like it would be small. If I do and find any appreciable difference, will let you know. Always appr

Re: [Freesurfer] using custom surface template

2018-12-19 Thread Bruce Fischl
Hi Jason we use the parcellation to figure out where we don't need to deform the pial surface. I expect our standard parcellation is good enough for this, so maybe you can just run your own posthoc? cheers Bruce On Wed, 19 Dec 2018, Jason Tourville wrote: External Email - Use Cau

[Freesurfer] using custom surface template

2018-12-19 Thread Jason Tourville
External Email - Use Caution Hello FreeSurfers, We use a custom surface template, generated according to the instructions in the SurfaceRegAndTemplates instructions for inter-subject co-registration. We then do cort