Sebastian,
I've attached a gzipped recon-all that has the -noseg flag. Do not copy
over the recon-all in your 2005-10-03 release, as it's not fully
compatible with that. Rather, I suggest opening the new recon-all in a
text editor, and look for instances of the variable 'UseAseg', and the -
noas
Hi Nick, hi All,
On 22. Feb 2006, at 19:39 Uhr, Nick Schmansky wrote:
In the freesurfer dev releases post 2006-18-01, there is a -noaseg flag
in recon-all. It will skip the auto-segmentation step, and not include
aseg.mgz in any subsequent processing (eg. wm seg and filling). The
flag is inte
In the freesurfer dev releases post 2006-18-01, there is a -noaseg flag
in recon-all. It will skip the auto-segmentation step, and not include
aseg.mgz in any subsequent processing (eg. wm seg and filling). The
flag is intended for usage with baby brains and non-human primates, as
these brains ca
Dear all,
at the moment I am struggling with flattening monkey anatomical scans.
Specifically I manually got to the point where I get a wm.mgz and now I
want to inflate it. My instructions refer to using csurf, which does
not like my mgz volumes and is deprecated IIRC, the alternative is
hook
