Hi Robby,
Thanks for sharing this and making me aware of the update (great that
this one will give you the motion parameters as well!).
So also for me it works now!
Have fun with your tracts of many subjects then :)!
Barbara
On 05/09/2014 09:22, Robby De Pauw wrote:
Hi Anastasia and Barbara
Hi Anastasia and Barbara
I updated Tracula and now everything is running fine.
Thx,
Robby
Robby De Pauw, drs.
Ghent University
Department of Physiotherapy and Rehabilitation Sciences
3B3
De Pintelaan 185
B-9000 Ghent
robby.dep...@ugent.be
On 04 Sep 2014, at 22:01, Anastasia Yendiki
wro
Hi Barbara - If your version is the same as Robby's, then you're trying to
use an option (different gradient table for each scan) that was added in a
tracula update. Older versions only allowed a single gradient table for
all scans. See:
http://surfer.nmr.mgh.harvard.edu/fswiki/Tracul
Hi Robby - The option to specify a different gradient table for each scan
(with bveclist) was introduced more recently. See:
http://surfer.nmr.mgh.harvard.edu/fswiki/Tracula/#Updates
The version that you're using doesn't recognize bveclist.
Hope this helps,
a.y
On Tue, 26 Aug 2014, R
Hi Barbara and FS-community,
I tried everything you suggested, but unfortunately the same error still
occurs. Have you found a solution yet?
Thanks for your help
Best regards,
Robby
Robby De Pauw, drs.
Ghent University
Department of Physiotherapy and Rehabilitation Sciences
3B3
De Pintelaan 1
Hi Robby,
Try this (with the backslashes), applied only to bveclist, if that does
not work, also to subjlist and dcmlist at the same time, and let me know
please.
I have started to process my data with a separate configuration file for
every subject :( - as no combination of alterations to the
Dear Barbara,
Unfortunately I haven’t found a solution yet. I’ll keep you up to date.
Greetings,
Robby
Robby De Pauw, dra.
Ghent University
Department of Physiotherapy and Rehabilitation Sciences
3B3
De Pintelaan 185
B-9000 Ghent
robby.dep...@ugent.be
On 01 Sep 2014, at 12:22, Barbara Kre
Dear all,
Robby, are you still having the problem? Did you solve it?
I am really having the same problem, just that I am using nifti files
instead of dicoms. I am using the same version as Robby. Please find my
command+output, trac-all.log and configuration file in the attachment.
I would also app
Hi Anastasia,I’m using this version of tracula.trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki ExpI’ve attached the log-file you requested.
Robby De Pauw, dra.Ghent UniversityDepartment of Physiotherapy and Rehabilitation Sciences3B3De Pintelaan 185B-9000 Ghentrobby.dep...@ugent.be
trac-all.log
Hi Robby - Which version of tracula are you using? In general it's hard to
guess what's going on just by seeing the error message. Please attach the
entire log file (scripts/trac-all.log).
a.y
On Mon, 25 Aug 2014, Robby De Pauw wrote:
Hi Anastasia
Thanks for your quick reply. I’ve changed
Hi Anastasia
Thanks for your quick reply. I’ve changed the command and I got one step
further. Now I get another error:
mv -f
/Users/rdpauw/Desktop/SUBJECTS_FS/T1/INP_080_LISA_V_1/dmri/dwi_orig_flip.mghdti.bvecs
/Users/rdpauw/Desktop/SUBJECTS_FS/T1/INP_080_LISA_V_1/dmri/bvecs
mv: rename
/User
Hi Robby - It looks like in your config file "setbveclist" is one word,
instead of "set bveclist". This may be why you're getting the "Badly
placed ()'s." error at the very beginning of your trac-all output. And it
would explain why it can't find the files.
Hope this helps,
a.y
On Thu, 21 A
Dear FreeSurfer,When I try to use TRACULA I keep getting the following error:mv -f /Users/rdpauw/Desktop/SUBJECTS_FS/T1/INP_080_LISA_V_1/dmri/dwi_orig_flip.mghdti.bvecs /Users/rdpauw/Desktop/SUBJECTS_FS/T1/INP_080_LISA_V_1/dmri/bvecsmv: rename /Users/rdpauw/Desktop/SUBJECTS_FS/T1/INP_080_LISA_V_1/d
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