Hi Qi - Is /Studies/*/DTI/dmrirc_subject a single file or multiple files?
What are the contents of that file?
a.y
On Fri, 6 May 2016, Zeng, Qi wrote:
Hi,
I am running dti data with trac-all. I followed the command:
trac-all -prep -c /Studies/*/DTI/dmrirc_subject
but it exited with erro
Hi,
I am running dti data with trac-all. I followed the command:
trac-all -prep -c /Studies/*/DTI/dmrirc_subject
but it exited with error "*Note: indexing (in both time and space)
starts with 0 not 1! Inputting -1 for a size will set it to the full
image extent for that dimension." *
Before. th
data?
>>
>> thanks
>> Jon
>>
>> - Original Message -
>> From: "Anastasia Yendiki"
>> To: "Jon Wieser"
>> Cc: freesurfer@nmr.mgh.harvard.edu
>> Sent: Tuesday, February 12, 2013 3:34:19 PM
>> Subject: Re: [Freesurfer]
nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> --bmask
> /Studies/MJMRI/MJ0012/freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz --fa
> /Studies/MJMRI/MJ0012/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5
quot;Jon Wieser"
Cc: freesurfer@nmr.mgh.harvard.edu
Sent: Tuesday, February 12, 2013 1:26:55 PM
Subject: Re: [Freesurfer] trac-all problem
Hi Jon - This is the same issue. The reading from the dicom part will work
for the Siemens dicoms that we have here but is not guaranteed to work
with oth
rsion 10.8.0: Tue
> Jun 7 16:32:41 PDT 2011; root:xnu-1504.15.3~1/RELEASE_X86_64 x86_64
>
> trac-preproc exited with ERRORS at Tue Feb 12 13:05:29 CST 2013
>
>
>
>
>
>
> - Original Message -
> From: "Anastasia Yendiki"
> To: "Jon Wieser&qu
d when using original dicoms. , but i'll
> try defining the nb0 variable
> thanks
> Jon
>
>
> - Original Message -
> From: "Anastasia Yendiki"
> To: "Jon Wieser"
> Cc: "freesurfer"
> Sent: Tuesday, February 12, 2013 10:49:
Hi Jon - My guess is you didn't define the nb0 variable in your
configuration file, see here:
http://www.freesurfer.net/fswiki/dmrirc
The new version, which will come out in a few days, will be able to figure
it out without you having to specify it but with the current version you
have
hello
i am trying to process the dti data with trac-all. I am new to tracula
my input images are 3300 dicoms, 60 slices and 55 dti diffusions
i have attached my dmrirc_single_subject file
i did the following command:
trac-all -prep -c /Studies/MJMRI/DTI/dmrirc_single_subject
and got the re
