27 Aug 2014 13:51:06 -0700
> From: Eileen Moore
> Subject: Re: [Freesurfer] trac-all -prep error field map error
> To: "freesurfer@nmr.mgh.harvard.edu"
> Message-ID:
> lvufckbs+_061v7dctfc5t11pn0k4g9d-c...@mail.gmail.com>
> Content-Type: text/plain; charset
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Message: 10
Date: Thu, 17 Jul 2014 04:14:16 -0400 (EDT)
From: Anastasia Yendiki
Subject: Re: [Freesurfer] trac-all -prep error field map error
To: Freesurfer support list
Message-ID:
Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed
ng these into the dmrirc file but I am still getting an
error. (See attached log file).
Thanks,
Eileen.
> --
>
> Message: 10
> Date: Thu, 17 Jul 2014 04:14:16 -0400 (EDT)
> From: Anastasia Yendiki
> Subject: Re: [Freesurfer] trac-all -prep error fie
s dicom images. Is
> there a way for me to do epidewarp manually and then follow through with the
> remaining steps using trac-all?
>
> Thanks,
> Eileen.
>
>
> Date: Mon, 14 Jul 2014 11:23:47 -0400 (EDT)
> From: Anastasia Yendiki
> Subject: Re: [F
dicom images.
Is there a way for me to do epidewarp manually and then follow through with
the remaining steps using trac-all?
Thanks,
Eileen.
Date: Mon, 14 Jul 2014 11:23:47 -0400 (EDT)
> From: Anastasia Yendiki
> Subject: Re: [Freesurfer] trac-all -prep error field map error
> To: F
Hi Eileen - That step is run with the program epidewarp.fsl, which you can
run on the command line to see the available options. The input phase map
volume is expected to have either 2 frames (2 separate phase maps) or 1
frame (the difference phase map). This error from trac-all means that it
