Good to know, thanks for sharing this trick!
On Sat, 3 Sep 2016, Chung, Yoonho wrote:
I found out why it didn't work. One of the script that bedpostx_postproc.sh
calls is written in python2. I set my default to python3 and therefore
caused the error in the last step. After I loaded python2 e
I found out why it didn't work. One of the script that bedpostx_postproc.sh
calls is written in python2. I set my default to python3 and therefore caused
the error in the last step. After I loaded python2 environment, i got the
merged files and finished properly. Thanks for your help as always!
Hi Yoon - It sounds like FSL's bedpostx postprocessing script
failed. You can run it like this:
bedpostx_postproc.sh /path/to/your/subject/dmri
This script merges the results from all the slices. It's possible that
something went wrong with the slices (you ran out disk space for exam
Hi Anastasia,
trac-all -prep completed without error.
I thought trac-all -bedp starts and ends without any error but trac-all path
failed with these messages.
Loading BEDPOST parameter samples from */dmri.bedpostX
niiRead(): error opening file*/dmri.bedpostX/merged_ph1samples.nii.gz
ERROR: Co
