Hi Deryk ,
Thanks for checking...As Anastasia mentioned, If FSL's bedpostx runs well
then that should work as well...I'm not exactly sure about why the error
is coming up and I can't replicate it on my computer either. Can you check
one more thing in your terminal? In your dmri.bedpostX directory
Hi Deryk - Trac-all doesn't call the version of bedpostx under the FSL dir
but a specially modified version in the freesurfer distribution (called
bedpostx_seychelles for historical reasons).
It's fine to run bedpostx directly since that works for you. You can also
upload the data set for us
Hi Priti
In addition, if I run bedpostx from the command line as follows:
bedpostx /usr/local/freesurfer/subjects/C001/dmri
it works just fine without errors.
Deryk
Deryk S. Beal, Ph.D., CCC-SLP, S-LP(C), Reg. CASLPO
Speech-Language Pathologist
C.I.H.R. Post Doctoral Research Fellow
Department
Hi Priti
Thank you for your quick replay. The following files / folders are listed in
my dmri.bedpostx directory:
**
/usr/local/freesurfer/subjects/C001/dmri.bedpostX$ ls
commands.txt diff_slices logs monitor xfms
***
Hi Deryk,
Is bedpostx properly installed in your computer? Can you just type
bedpostx in your terminal to see if it gives this message?
Usage: bedpostx [options]
expects to find bvals and bvecs in subject directory
exp
Dear Tracula Users
I completed trac-all -prep -c without difficulty or errors. However, without
any changes to my director structure or my Tracula config file I am
receiving the following errors when running trac-all -bedp -c. I will copy
and past my config file contents below the error messages.
