Hi Barbara - You can just insert the command that does your correction
right after that dtifit command line. As long as your command produces
the same set of outputs with the same naming convention (dtifit_FA.nii.gz,
dtifit_V1.nii.gz, ...), all subsequent steps will work the same.
Hope this
Dear all,
I would like to make amendments to the FSL dtifit call during trac-preproc.
In which way can I edit the call in trac-preproc?
# LS tensor estimation
set cmd = dtifit
set cmd = ($cmd -k $dwidir/dwi.nii.gz)
set cmd = ($cmd -m $brainmask)
set cmd = ($cmd -r $dwidir/bvecs)
set cm
