What is your command line and log file? Sounds like the initial
registration failed.
On 9/11/16 10:04 PM, A Nunes wrote:
Hi,
After doing a bbregistration I visualized the results with
tkregister2. The target is alright, however, the moveable is not
present, it is just a white screen.
What
Hi,
After doing a bbregistration I visualized the results with tkregister2. The
target is alright, however, the moveable is not present, it is just a white
screen.
What steps could I take to solve this issue?
Thanks
Adonay
___
Freesurfer mailing list
F
Rito,
Hi, tkregister2 works for me on lion. do tkmedit and tksurfer work? did
you install XQuartz via these instructions?
https://surfer.nmr.mgh.harvard.edu/fswiki/MacTksurfer
Actually i dont know if it necessary for lion to install XQuartz, but that
is what i am running on my lion system (bec
Hi All,
I have freesurfer 5.1 installed on my laptop running Lion. When I tried to use
tkregister2, the program doesnt load up the GUI. It failed even after
installing XQuartz.
It loaded successfully in a machine running Snow Leopard.
Any suggestions on how to get around it or are there any fi
Hi Daniel
what subject are you trying to run on? I think it's complaining about one
of the "*_d" parts of your command. Can you put the actual name in
instead of a wildcard?
cheers
Bruce
On Fri, 9 Mar 2012, Daniel Preciado wrote:
> Dear list,
>
> I'm having problems with the tkregister2 comma
Dear list,
I'm having problems with the tkregister2 command, I input the following command:
tkregister2 --mov ~/Desktop/input/*_d/mri/rawavg.mgz --noedit --s *_d
--regheader --reg ~/Desktop/input/*_d/mri/register.dat
Where I'm setting the directory of my subjects, and I get the following outp
Hi,
I am working on my workstation in the center. I don't currently have
access to another machine as I am located in building 120. Is there
something else I could try?
thanks
> Does that command work on other machines? Are you remotely logged in?
>
> j...@nmr.mgh.harvard.edu wrote:
>> Hel
Does that command work on other machines? Are you remotely logged in?
j...@nmr.mgh.harvard.edu wrote:
Hello,
I am still getting the same error and can't figure out what mistake I may
be making. Any help would be appreciated,
thanks!
Jake
Hi, I can't seem to open a window in tkregis
Hello,
I am still getting the same error and can't figure out what mistake I may
be making. Any help would be appreciated,
thanks!
Jake
> Hi, I can't seem to open a window in tkregister2. Any help would be
> appreciated, thanks!
>
>
> [striatum:mri] (nmr-std-env) tkregister2 --targ orig.
Hi, I can't seem to open a window in tkregister2. Any help would be
appreciated, thanks!
[striatum:mri] (nmr-std-env) tkregister2 --targ orig.mgz --mov
/space/amaebi/35/users/ablood/R01_Botox/CD_R01BTX_ctrl2_sess2/bold/020/fmcsm4.bhdr
--reg
/space/amaebi/35/users/ablood/R01_Botox/CD_R01BTX_ctrl
it wants the number of dimensions to be either 3 or 4, even if the size
of those dims is only 1. You'll probably have to edit the header, though
I'm not sure how to do that.
Susie Heo wrote:
Hello,
When I try to use the Freesurfer command 'tkregister2' (or 'mri_convert', or
any Freesurfer co
Hello,
When I try to use the Freesurfer command 'tkregister2' (or 'mri_convert', or
any Freesurfer command for that matter) to read in my nifti files created using
SPM, I receive the error message:
"niiRead(): 2 dimensions in ../rsH794_1.nii; unsupported
ERROR: could not read ../rsH794_1.nii as 2
12 matches
Mail list logo
