Not sure what would give you nans though. Can you find a voxel with a nan
in it and see at what point it gets created (e.g. orig.mgz, T1.mgz, etc..)
no attachment...
Bruce
On Tue, 29 Aug 2006, Derin Cobia wrote:
Bruce,
No, I processed all of them the same way (converted files, -autorecon1,
Sorry, visual artifacts- yes (still there), crashing/freezing- no (but
I've been trying hard). It's only been about an hour since the update,
I'll keep you posted. So, should I worry about the artifacts affecting
output? If I scroll through the slices long enough, they eventually all
disappear.
OK, so since you updated the graphics driver, you've had no problems
with either the visual artifacts or the crashing/freezing? If there
have been no problems, we'll assume the graphics driver fixed
it. Otherwise, let us know.
On Tue, Aug 29, 2006 at 01:24:09PM -0500, Derin Cobia wrote:
> Bruce,
>
Bruce,
No, I processed all of them the same way (converted files, -autorecon1,
etc). The scan quality differs among them, but I tossed the really bad
ones. Here is the xdebug file. Also, is what I'm seeing in this slice
(see attached jpg) something to worry about? If I scroll through other
sli
were these processed any differently? The .xdebug_tkmedit should be in pwd
wherever you ran it from.
Bruce
On Tue, 29 Aug 2006, Derin Cobia
wrote:
Kevin-
Yeah, either way. In my "infinite" wisdom I thought that scrolling slower
would help, but not so.
Nick-
I'm unable to locate a .xdebug
Kevin-
Yeah, either way. In my "infinite" wisdom I thought that scrolling slower
would help, but not so.
Nick-
I'm unable to locate a .xdebug_tkmedit file in either the freesurfer or
subjects directory. Would it be somewhere else? It looks like we're
using the 1.0-8178 Nvidia driver for our Qua
Hm, I can't reproduce this.
So, you load up a volume, and repeatedly press an arrow key to scroll
through the slices? Or hold the button down?
On Mon, Aug 28, 2006 at 11:16:49AM -0500, Derin Cobia wrote:
> I've been experiencing some crashes/freezing using tkmedit lately, and
> have been able to
Derin,
Does the file .xdebug_tkmedit show any error messages
after a lock-up occurs? If so, can you send that file
to me? Another possibility is that the graphics driver
may need to be updated. Do you have an NVIDIA card?
Nick
> I've been experiencing some crashes/freezing using tkmedit late
I've been experiencing some crashes/freezing using tkmedit lately, and
have been able to reproduce it pretty reliably. It occurs when I scroll
through the slices of the subject either using the arrows keys or clicking
through on the toolbar. It happens when viewing a variety of volumes
(brainmask
