Re: [Freesurfer] time series data from FSFAST

2015-02-09 Thread Douglas Greve
*Sent:* Monday, February 9, 2015 3:32 PM *Subject:* Re: [Freesurfer] time series data from FSFAST On 2/9/15 3:16 PM, sabin khadka wrote: Thanks Doug. I am now able to get average time series from cortical ROIs. I used mri_segstats --annot fsaverage lh aparc --i sess01/bold/001/fmcpr.up.sm5.fsave

Re: [Freesurfer] time series data from FSFAST

2015-02-09 Thread sabin khadka
From: Douglas Greve To: freesurfer@nmr.mgh.harvard.edu Sent: Monday, February 9, 2015 3:32 PM Subject: Re: [Freesurfer] time series data from FSFAST On 2/9/15 3:16 PM, sabin khadka wrote: Thanks Doug. I am now able to get average time series from cortical ROIs. I used mri_segstats

Re: [Freesurfer] time series data from FSFAST

2015-02-09 Thread Douglas Greve
To:* freesurfer@nmr.mgh.harvard.edu *Sent:* Monday, February 9, 2015 1:24 PM *Subject:* Re: [Freesurfer] time series data from FSFAST Yes, mri_segstats. Run it with --help. See esp example 6 On 2/9/15 12:31 PM, sabin khadka wrote: Hi FS Users, I've preprocessed resting state fmri data using preproc-sess

Re: [Freesurfer] time series data from FSFAST

2015-02-09 Thread sabin khadka
Greve To: freesurfer@nmr.mgh.harvard.edu Sent: Monday, February 9, 2015 1:24 PM Subject: Re: [Freesurfer] time series data from FSFAST Yes, mri_segstats. Run it with --help. See esp example 6 On 2/9/15 12:31 PM, sabin khadka wrote: Hi FS Users, I've preprocessed res

Re: [Freesurfer] time series data from FSFAST

2015-02-09 Thread Douglas Greve
Yes, mri_segstats. Run it with --help. See esp example 6 On 2/9/15 12:31 PM, sabin khadka wrote: Hi FS Users, I've preprocessed resting state fmri data using preproc-sess as shown in FSFAST functional connectivity walk through manual. I know I can extract mean time series of a seed region usi

[Freesurfer] time series data from FSFAST

2015-02-09 Thread sabin khadka
Hi FS Users, I've preprocessed resting state fmri data using preproc-sess as shown in FSFAST functional connectivity walk through manual. I know I can extract mean time series of a seed region using fcseed-sess. I am trying to find a command to extract mean time series from all Desikan (or Dest