Re: [Freesurfer] time critical problem: mri_ca_register failure during recon-all run

2015-02-11 Thread Krieger, Donald N.
to:freesurfer- > boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl > Sent: Wednesday, February 11, 2015 9:53 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] time critical problem: mri_ca_register failure > during > recon-all run > > Hi Don > > does it repeatably die i

Re: [Freesurfer] time critical problem: mri_ca_register failure during recon-all run

2015-02-11 Thread Bruce Fischl
/Text -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer- boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Wednesday, February 11, 2015 9:39 AM To: Freesurfer support list Subject: Re: [Freesurfer] time critical problem: mri_ca_register failure d

Re: [Freesurfer] time critical problem: mri_ca_register failure during recon-all run

2015-02-11 Thread Krieger, Donald N.
fer- > boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl > Sent: Wednesday, February 11, 2015 9:39 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] time critical problem: mri_ca_register failure > during > recon-all run > > Hi Don > > are you runnin

Re: [Freesurfer] time critical problem: mri_ca_register failure during recon-all run

2015-02-11 Thread Bruce Fischl
Hi Don are you running a single job on the 8G machine? What FS version? We haven't seen any core dumps in mri_ca_register recently. If you run it without openmp does it work? Kind of worrisome that it dies in a different place on a different machine Bruce On Wed, 11 Feb 2015, Krieger, Donal

[Freesurfer] time critical problem: mri_ca_register failure during recon-all run

2015-02-11 Thread Krieger, Donald N.
Dear list: We are under a significant deadline on which this freesurfer run depends. I'm reposting from last night along with a bit of additional information. A 2nd run on a different box yielded: nu_correct: crashed while running nu_estimate_np_and_em (termination status=256) Also, the box