Re: [Freesurfer] Thickness standard deviation map

2007-08-06 Thread Doug Greve
The easiest thing is #2. It will produce rstd.mgh as an output, and that's what you want. Burmicz, Ryszarda wrote: Hi Freesurfers, I have tried looking this up on the list, but I don't understand exactly what to do in this scenario: I have a group of subjects (all controls). I want to crea

[Freesurfer] Thickness standard deviation map

2007-07-31 Thread Burmicz, Ryszarda
Hi Freesurfers, I have tried looking this up on the list, but I don't understand exactly what to do in this scenario: I have a group of subjects (all controls). I want to create a surface map of the standard deviations of the thickness values (i.e. to show how the thicknesses vary across subje

Re: [Freesurfer] thickness standard deviation

2006-08-24 Thread Bruce Fischl
not really, since they contain both gyral and sulcal regions. Better than the whole surface I guess, but spatial standard deviations don't mean a whole lot - it's the cross subject ones you care about Bruce On Thu, 24 Aug 2006, Sasha Wolosin wrote: I understand that thickness may vary great

Re: [Freesurfer] thickness standard deviation

2006-08-24 Thread Bruce Fischl
Hi Sasha, the standard deviation across the surface isn't a very meaningful number, since the thickness isn't spatially stationary. cheers, Bruce On Thu, 24 Aug 2006, Sasha Wolosin wrote: Dear all, I am interested in measuring mean thickness within ROI in MPRAGEs of children. My mean t

Re: [Freesurfer] thickness standard deviation

2006-08-24 Thread Sasha Wolosin
I understand that thickness may vary greatly across the entire surface, but shouldn't we expect some stability within smaller regions (e.g. those in the Desikan/Killany atlas)? >>> Bruce Fischl <[EMAIL PROTECTED]> 8/24/2006 4:40 pm >>> Hi Sasha, the standard deviation across the surface isn't a v

[Freesurfer] thickness standard deviation

2006-08-24 Thread Sasha Wolosin
Dear all, I am interested in measuring mean thickness within ROI in MPRAGEs of children. My mean thickness values tend to be around 3.3 mm, with a standard deviation of about 1mm. I am concerned that these standard deviations are somewhat high. What typical values should I be expecting for st