Re: [Freesurfer] talairach.xfm p=0.0000 error, brainmask.mgz not created

2009-08-11 Thread Bruce Fischl
Hi Prantik, do you process the data directly from dicoms? If you bring up the orig.mgz in tkmedit does it orient properly? cheers Bruce On Tue, 11 Aug 2009, Prantik Kundu wrote: > Hello > > In default FS usage, all of the MPRAGE's from this particular study > that I'm analyzing are dying with

[Freesurfer] talairach.xfm p=0.0000 error, brainmask.mgz not created

2009-08-11 Thread Prantik Kundu
Hello In default FS usage, all of the MPRAGE's from this particular study that I'm analyzing are dying with the error shown below. MPRAGE's from other studies appear to be processed just fine. The MPRAGEs from the experiment that FS is failing on are generally of higher quality than those