Re: [Freesurfer] surfreg cannot allocate memory

Xu Reply-To: FS Help Date: Thursday, December 20, 2018 at 5:47 PM To: FS Help Subject: Re: [Freesurfer] surfreg cannot allocate memory External Email - Use Caution WOW I cannot. Freeview showed “failed to load MRI .../mri/brain.mgz”. I had permission to read and write though

Re: [Freesurfer] surfreg cannot allocate memory

in.mgz in freeview > without getting this error? > Andrew > > > From: on behalf of Haoran Xu > > Reply-To: FS Help > Date: Thursday, December 20, 2018 at 2:33 PM > To: FS Help > Subject: Re: [Freesurfer] surfreg cannot allocate memory > > Extern

Re: [Freesurfer] surfreg cannot allocate memory

Hi Haoran, are you able to load the subject’s mri/brain.mgz in freeview without getting this error? Andrew From: on behalf of Haoran Xu Reply-To: FS Help Date: Thursday, December 20, 2018 at 2:33 PM To: FS Help Subject: Re: [Freesurfer] surfreg cannot allocate memory External

Re: [Freesurfer] surfreg cannot allocate memory

haora...@gmail.com> > *Reply-To: *FS Help > *Date: *Thursday, December 20, 2018 at 1:05 PM > *To: *FS Help > *Subject: *Re: [Freesurfer] surfreg cannot allocate memory > > > > *External Email - Use Caution* > > Thanks for the suggestion! But it seems

Re: [Freesurfer] surfreg cannot allocate memory

To: FS Help Subject: Re: [Freesurfer] surfreg cannot allocate memory External Email - Use Caution Thanks for the suggestion! But it seems the max memory size was unlimited already. Any more thoughts about this? Best, Haroan $ ulimit -a core file size (blocks, -c) 0 data seg

Re: [Freesurfer] surfreg cannot allocate memory

External Email - Use Caution Thanks for the suggestion! But it seems the max memory size was unlimited already. Any more thoughts about this? Best, Haroan $ ulimit -a core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority

Re: [Freesurfer] surfreg cannot allocate memory

External Email - Use Caution Hello Haoran, You could try looking at your shell limits and see if the memory size is listed as something other than “unlimited”.   In bash shell, $ bash $ ulimit -a core file size          (blocks, -c) 0 data seg size           (kbytes, -d) unlimite

[Freesurfer] surfreg cannot allocate memory

External Email - Use Caution Hello FreeSurfer Developers, I am using surfreg to map one of my subject "subj001" to "fsaverage_sym" by these commands: surfreg --s subj001 --t fsaverage_sym --lh surfreg --s subj001 --t fsaverage_sym --lh --xhemi The first command worked well, howe