Re: [Freesurfer] surface stream steps

2013-06-10 Thread Douglas N Greve
The classification of WM probably takes the most. This includes a lot of things, the longest is the subcortical segmentation. See recon-all-status.log for a list of times of each operation. doug On 06/08/2013 03:05 PM, Joshua Lee wrote: > Dear Freesurfers, > > From the Wiki Freesurfer surface s

[Freesurfer] surface stream steps

2013-06-08 Thread Joshua Lee
Dear Freesurfers, >From the Wiki Freesurfer surface stream follows something like: 1. Affine registration to Tal. 2. Bias correction and skull stripping 3. Classify WM 4. Cut hemisphere planes 5. Tile WM surface 6. Refine WM surface following GM-WM intensity gradients 7. Nudg