Re: [Freesurfer] surface labels to volume masks in MNI space

2021-11-03 Thread Douglas N. Greve
So you want to map the labels in fsaverage into MNI152 volumes pace, right? After mris_divide_parcellation, you should have a parcellation in fsaverage space. Use mri_surf2surf (or mris_apply_reg) to map that into the MNI152 that you ran recon-all on. Look in the recon-all.log file for the comm

[Freesurfer] surface labels to volume masks in MNI space

2021-11-03 Thread Alvarado,Luis R
External Email - Use Caution Hi all, I am having a bit of a hard time figuring out the best option to convert surface labels to mni volume masks. For my ROI FS analysis, I divided the fsaverage S1 and M1 labels into 5 sub-labels using mris_divide_parcellation. I then used mri_l