The problem is that one volume (001.mgz) has 158 slices, while the other
volume (002.mgz) has 160 slices. Originating volumes all need to be the
same size.
I'll add an error-check to print a message if there is a mismatch.
If you really want to use these two volumes, then you could run
mri_conve
Hi
I emailed a little while ago about this, but I haven't heard any
solutions yet. As a check, I re-ran recon-all again this morning on a
local machine. Still crashing. Here is the output:
> recon-all -s $SUBJECT -motioncor
INFO: SUBJECTS_DIR is /autofs/space/megraid_043/seder/freesurfer
Ac
