Re: [Freesurfer] stat/math tools for MGH file

2015-11-02 Thread Yang, Daniel
Hi Bruce, Yes, that’s perfect! Thanks for the reply!! :) Best, Daniel On 11/2/15, 8:48 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl" wrote: >Hi Daniel > >you can always convert to nifti via: > >mri_convert cluster.mgh cluster.nii > >and you will be able to use the FSL

Re: [Freesurfer] stat/math tools for MGH file

2015-11-02 Thread Bruce Fischl
Hi Daniel you can always convert to nifti via: mri_convert cluster.mgh cluster.nii and you will be able to use the FSL tools cheers Bruce On Tue, 3 Nov 2015, Yang, Daniel wrote: > Dear FreeSurfer experts, > > I have a number of *.cluster.mgh files and I would like to calculate their > diff

[Freesurfer] stat/math tools for MGH file

2015-11-02 Thread Yang, Daniel
Dear FreeSurfer experts, I have a number of *.cluster.mgh files and I would like to calculate their difference and peak coordinate etc like in fslmaths or fslstats in FSL. For example, given two images, I want to know the brain regions in image1 but not in image2. Could you please recommend th