Yes, it does MC then STC. This is a chronic problem that has never been
solved. If you do STC first and there is significant motion, then the
STC will be wrong. They really need to be done simultaneously. However,
if you use an ascending or descending slice acq (instead of
interleaved), then th
Can you tell me the order of the slice timing and motion correction steps
in preproc-sess (freesurfer v 4.5)? From the wiki it looks like motion
correction is done first (For MC the input will be f and the output will be
fmc For STC the input will be fmc and the output will be fmcstc". However,
w
On 01/31/2013 03:09 PM, Maryam Vaziri Pashkam wrote:
> Hi Doug,
>
> Two questions:
> 1) In fsfast preprocessing is STC done first or MC? is there a way to
> control the order?
MC is done first, then STC. There is not an easy way to control the
order, though it may be possible.
>
>
> 2) Also if S
Hi Doug,
Two questions:
1) In fsfast preprocessing is STC done first or MC? is there a way to
control the order?
2) Also if STC is not mentioned in the analysis line and only done in the
preprocessing would the analysis be run on the STC data automatically? or
should I specify STC in the analysi
