Re: [Freesurfer] set up of initial data directories

2008-07-30 Thread Jenni Pacheco
Hi Stephen, To follow up, your command line should work just fine, and will set up the directories you need. Jenni On Wed, Jul 30, 2008 at 6:56 AM, Bruce Fischl <[EMAIL PROTECTED]>wrote: > HI Stephen, > > not quite raw image space, but mostly. Definitely not tal coords. We > resample into a 256

Re: [Freesurfer] set up of initial data directories

2008-07-30 Thread Bruce Fischl
HI Stephen, not quite raw image space, but mostly. Definitely not tal coords. We resample into a 256^3 volume aligned with the native scanner coords. cheers, Bruce On Wed, 30 Jul 2008, Stephen Rose wrote: Hi I am a new freesurfer user so I apologize in advance for the basic questions. If

[Freesurfer] set up of initial data directories

2008-07-30 Thread Stephen Rose
Hi I am a new freesurfer user so I apologize in advance for the basic questions. If I already have my MPRAGE images in mgz format (i.e I don't need to convert the raw dicom data with mri_convert), what changes to the command line (below) do I need so that the all the correct data directories