Ah! That was helpful, Doug. While eliminating the & at the end didn't do
anything, running the debug version of the command shows the following at
the end of log.txt (attached):
set subjdir = $SUBJECTS_DIR/$subjid
set subjdir = /home/hurry01/.gvfs/ebblvm$ on
callunavm.psy.tufts.edu/projects/resdep
Ah, sorry-- that too: tcsh 6.18.01.
(The command, which I just sent in a previous message, was as follows:
recon-all -i /home/hurry01/r/resdep_mri_data/resdep014/265000-10-1.dcm -s
resdep214 -all &
)
Heather
On Wed, Aug 7, 2013 at 12:42 PM, Bruce Fischl wrote:
> and what shell are you usin
and what shell are you using
On Wed, 7 Aug 2013, Douglas N Greve wrote:
> what is your command line?
>
>
>
>
> On 08/07/2013 10:19 AM, Heather L. Urry wrote:
>> Hi folks,
>>
>> When issuing a recon-all command, I'm seeing the following message:
>>
>> set: Variable name must contain alphanumeric ch
Here it is:
recon-all -i /home/hurry01/r/resdep_mri_data/resdep014/265000-10-1.dcm -s
resdep214 -all &
(sorry for not thinking to include it originally)
Heather
On Wed, Aug 7, 2013 at 11:48 AM, Douglas N Greve
wrote:
> what is your command line?
>
>
>
>
> On 08/07/2013 10:19 AM, Heather L. Ur
what is your command line?
On 08/07/2013 10:19 AM, Heather L. Urry wrote:
> Hi folks,
>
> When issuing a recon-all command, I'm seeing the following message:
>
> set: Variable name must contain alphanumeric characters
>
> recon-all stalls and doesn't move forward (doesn't even create the
> sub
Hi folks,
When issuing a recon-all command, I'm seeing the following message:
set: Variable name must contain alphanumeric characters
recon-all stalls and doesn't move forward (doesn't even create the subject
directory).
I'm using Freesurfer 5.3.0
(freesurfer-Linux-centos6_x86_64-stable-pub-v5.
