Re: [Freesurfer] running motion correction

2009-10-21 Thread Bruce Fischl
Hi Fatima, you can just specify the input dicom(s) with -i to recon-all and it will skip the motion correction if there is only one run. cheers, Bruce On Wed, 21 Oct 2009, Ahmed, F, Me wrote: > Hello, > > I'm currently converting my dicom images into the mgz format and I was > wondering, I o

[Freesurfer] running motion correction

2009-10-21 Thread Ahmed, F, Me
Hello, I'm currently converting my dicom images into the mgz format and I was wondering, I only have one acquisition per subject, therefore do I have to run the motion correction step before running autorecon1? Or can I just go straight into running autorecon1? From the tutorial, I'd imagine I