Hi Rosa,
You could run "tkrefgister2 --help" and "mri_vol2vol --help" on the command
line to get some pointers.
Assuming Freesurfer version 4.5 to register two volumes use:
tkregister2 --targ ${targ_dir}/${targ_vol} --mov ${src_dir}/${src_vol} --s
$session --regheader --reg ${reg_dir}/${out_reg
Hi Rosa,
You could run "tkrefgister2 --help" and "mri_vol2vol --help" on the command
line to get some pointers.
Assuming Freesurfer version 4.5 to register two volumes use:
tkregister2 --targ ${targ_dir}/${targ_vol} --mov ${src_dir}/${src_vol} --s
$session --regheader --reg ${reg_dir}/${out_reg
You can try loading your volume as both the targ and mov, rotating it to
where you want, saving the registration, then using mri_vol2vol to apply
the transformation. See if that works.
doug
Rosa Lafer-Sousa wrote:
> Hi,
>
> I need to manually rotate and reslice an anatomical volume. I am
> pr
Hi,
I need to manually rotate and reslice an anatomical volume. I am pretty
sure this can be done using tkregister (or tkregister2?), but the
documentation is limited. If tkregister is the way to go, what is the
command line I need to enter pull up my volume (e.g raw_rawavg.mgz) in
the GUI? I
