Re: [Freesurfer] retinotopy question

2007-07-04 Thread Doug Greve
Use the avb, that's an F signed by the sine component of the FFT at the fundamental. On Wed, 4 Jul 2007, Lars Kuchinke wrote: thanks jonathan & doug, is it appropriate to use the avb contrast (all vs baseline ?) or do i have to compute a two-sided 1 -1 f-contrast? lars Jonathan Polimen

Re: [Freesurfer] retinotopy question

2007-07-04 Thread Lars Kuchinke
thanks jonathan & doug, is it appropriate to use the avb contrast (all vs baseline ?) or do i have to compute a two-sided 1 -1 f-contrast? lars Jonathan Polimeni schrieb: hi lars, i just checked with doug, and he agreed that, since your stimulus is periodic, 'sfa-sess' can do the job provi

Re: [Freesurfer] retinotopy question

2007-06-28 Thread Doug Greve
Actually, you can do it either as a simple blocked design where you specify the timing of each block as described below or as an AB-Blocked design. If they latter, then you would run mkanalysis-sess with -designtype abblocked and then use sfa-sess. If you use -designtype blocked, then you wo

Re: [Freesurfer] retinotopy question

2007-06-27 Thread Jonathan Polimeni
hi lars, i just checked with doug, and he agreed that, since your stimulus is periodic, 'sfa-sess' can do the job provided that you specify that the analysis should be carried out using a block design. so, for example, if the TR is 2 sec, and since each of your conditions lasts 20 TRs per epoch

Re: [Freesurfer] retinotopy question

2007-06-27 Thread Lars Kuchinke
thanks Jon, i didn't know that a simple block design analysis is possible to compute the visual area boundaries... (which is the reason why I tried to fit it into the standard sfa-sess analysis)... could you explain me (shortly) what to do than with my data regards, Lars. -design info: 8hz f

Re: [Freesurfer] retinotopy question

2007-06-26 Thread Jonathan Polimeni
hi lars, the FSFast retinotopy analysis stream is geared towards temporal phase encoded data analysis, which produces field sign maps that can be used to define area boundaries. if you opt to use stationary wedge stimuli to activate the horizontal and vertical meridian representations in visual

[Freesurfer] retinotopy question

2007-06-26 Thread Lars Kuchinke
Hi all, I used a retinotopy paradigm with two horizontal and vertical wedges located at the meridians (flickering at 8Hz, switching every 20 seconds) do you think that this paradigm does fit into fsfastretinotopy analysis? I'm not sure if it makes a difference compared to rotating edges... A