This is the purpose of fsplam. fspalm is just a frontend for palm meant
to produce the output your would have gotten if you had run
mri_glmfit-sim. If you don't want to run fspalm, then look inside it for
the commands that do this.
On 2/11/19 9:05 AM, C.P.E. Rollins wrote:
> External E
External Email - Use Caution
Hi Douglas,
I'm using FSL PALM, but am wondering if there is a way to produce a file
like the something.y.ocn.dat file from fspalm. That is, I would like to
calculate the mean thickness for each subject and cluster from FSL PALM
outputs.
Thanks again
Are you using fspalm? If so, there should be a something.y.ocn.dat file
that has the mean thickness for each subject and cluster
On 2/8/19 6:16 AM, C.P.E. Rollins wrote:
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>
> Dear Freesurfer Developers,
> I'm using PALM to run permutation analyses to correct
External Email - Use Caution
Dear Freesurfer Developers,
I'm using PALM to run permutation analyses to correct for multiple
comparisons on Freesurfer cortical thickness and LGI data. fspalm from a
command like "mri_glmfit-sim --glmdir lh.lgi.glmdir --perm 1000 2 pos
--cwp .05 --
