Thanks, Doug!
I made that rectangle mark on the forehead actually.
According to your suggestion, I tried
tkmedit test orig.mgz -overlay test_mark.img -overlay-reg reg.dat
The only mark that I could find is on the left side of the image in coronal view
and nothing in sagittal view. So there is s
In step 3, was the registration correct?
You can also try:
tkmedit test orig.mgz -overlay test_mark.img -overlay-reg reg.dat
the mark should be in the right place.
[EMAIL PROTECTED] wrote:
Hi all,
I got some problems when I tried to overlay some maps one brain surface. The
following ste
Hi all,
I got some problems when I tried to overlay some maps one brain surface. The
following steps is just for test.
1.recon-all -all -notalairach -i MP-rage/001.dcm s test
2.I use matlab to load the save dataset (MP-rage/001.dcm ~ 160.dcm)
and
then mark the back-head (>10
I agree with Nick. Are you sure it's not still running? Looks to me like it
is. Did it actually segfault? mri_ca_register can take a *long* time to
run: 10-20 hours depending on the computer and the brain.
Bruce
On Mon, 3 Jul 2006
[EMAIL PROTECTED] wrote:
Dear freesurfers,
I got some pro
Does 'top' (the process monitor utility) indicate that mri_ca_register is
continuing to run? If so, then likely there is not a problem. This
portion of recon-all can take quite a long time (about 10 hours), so you
should let it run overnight.
> Dear freesurfers,
>
> I got some problems running
Hmm, that was not too helpful. Can you do the following:
1. Run mri_info on
/space/dilks/filling-in/data/filling-in001/bold/localizer_sm5/avb/sig.bhdr
and verify the voxel dimensions. If that is not correct, look at the
h-offset.bhdr and h.bhdr volumes in localizer_sm5. If that is not
correct
Hi Doug,We're running on a Red Hat Enterprise 4 (kernel 2.6.9-22) using Freesurfer 3 (downloaded on 3/406)We can give you all the path for the files, but since this is not an MGH server I'm not sure this will be useful to you.Here is the command and the output.tkmedit-sess -sf sessid -df sessdir -a
hi chris,
We're going to need more info. Please consult
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
doug
Chris Baker wrote:
Hi,
I'm trying to register a set of functionals with anatomical data and
am finding that even though the registration looks good when viewed in
tkregister (
