Re: [Freesurfer] reconstruction question

2011-02-03 Thread Bruce Fischl
Hi Evan how big is that defect? The topology correction complexity goes as the square of the convex hull of the largest defect, so fast for small ones but a long time for big ones. Usually big ones only occur if there is something seriously wrong though (e.g. skull attached to the white matter

[Freesurfer] reconstruction question

2011-02-03 Thread Evan Luther
Hello, My name is Evan Luther and I have been working with Dr. David Ress at the University of Texas at Austin to create a high resolution (.7 mm) volume using FreeSurfer. In the last step of our data pipeline I enter the command: recon-all -segmentation -fill -tessellate -smooth1 -inflate1 -qsph