Re: [Freesurfer] recon -all with .nii input problems with perl version 5.18

2014-05-28 Thread Nick Schmansky, MGH
Samuel, Unfortunately the program that's failing is 'mritotal', which is an MNI tool that is distributed with freesurfer, so it's unlikely that we'll track this down anytime soon. However, this program is only run after our primary talairach alignment utility fails, and it appears from your recon

[Freesurfer] recon -all with .nii input problems with perl version 5.18

2014-05-16 Thread Samuel Thorpe
Hello, I recently upgraded from Ubuntu 13.10 to 14.04, and I started getting a new error message while running "recon-all" with .nii file inputs (details below). From the error message I believe the problem might be that Ubuntu 14.04 ships with perl version 5.18 (as opposed to 5.14 for previo