Re: [Freesurfer] recon-all with T1 and T2 images

2018-04-26 Thread Bruce Fischl
Hi Heidi it is easy to imagine there being a regionally specific bias between processing so you are better off doing them all the same way cheers Bruce On Wed, 25 Apr 2018, Heidi Lindroth wrote: External Email - Use Caution Hello,  I have processed the majority of my T1 i

[Freesurfer] recon-all with T1 and T2 images

2018-04-25 Thread Heidi Lindroth
External Email - Use Caution Hello, I have processed the majority of my T1 images using the general recon-all command. After reviewing segmentation, a number of images have the pial surface included in the gray matter. I re-ran an image with the recon-all command combining the