As I said before, I would average the T1weighed images that vbm puts in
mni152 space, then run recon-all on that
On 3/14/19 6:06 AM, Laboratorio de Neurociencia Funcional wrote:
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> Dear Doug,
>
> please let me know if it is possible to run the recon-all t
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Dear Doug,
please let me know if it is possible to run the recon-all to the fsaverage
subject of my sample to obtain specific labels (from the aparc+aseg.mgz and
the aparc.a2009s+aseg.mgz files) derived from my analysis sample.
Many thanks in advance.
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I just want to use some labels contained in the aparc+aseg.mgz and the
aparc.a2009s+aseg.mgz files to build an anatomical template that can be
used in VBM analysis. To my understanding, these labels should be obtained
from the entire sample since they w
I'm still not sure what you are trying to do. If you are running vbm,
you can usually get the T1 sampled in the MNI space for all subjects.
You can average them together and run the average through recon-all
On 3/12/19 11:44 AM, Laboratorio de Neurociencia Funcional wrote:
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Hi Bruce,
what I really need is to obtain several labels that are only included in
the aparc+aseg, not for each subject but for the entire sample. My goal is
to use these labels (ROIs) in VBM analysis after they are trasformed to
volume and further reg
Hi Jose
can you clarify what you mean by "...to get all the labels that are
obtained in each individual subject." You almost certainly don't need to
recon fsaverage to do this, but I'm not sure exactly what you mean
cheers
Bruce
On Tue, 12
Mar 2019, Laboratorio de Neurociencia Funcional wro
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Dear Freesurfers,
I would like to apply recon-all to the fsaverage subject of my sample to
get all the labels that are obtained in each individual subject. However,
it is not possible because my average subject doesn't contain the file
/orig/001.mgz re
