Hi Alex
that's pretty bad! You could start by specifying some expert options about
the ranges of gray and white matter intensities to mri_segment and
mris_make_surfaces. Hopefully someone will chime in with the syntax, as I
don't remember it. You can also check the recon-all.log to see what ran
Hi,
after running recon-all on many datasets without any manual
intervention, it looks like I finally have to.
As you can see in :
https://dl.dropboxusercontent.com/u/2140486/Screen%20Shot%202013-08-28%20at%2013.16.52.png
the CSF is segmented as gray matter while white+gray matters are merged.
