You have to tell it to do something, eg, add -all to the command line
On 7/13/2022 11:53 PM, Zixuan Lin wrote:
External Email - Use Caution
Hello!
I am trying to run recon-all but it only converted the original image
to .mgz and finished without error. I checked all other folders and
From: on behalf of Zixuan Lin
Reply-To: Freesurfer support list
Date: Wednesday, July 13, 2022 at 8:53 PM
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] recon-all finished without error but no results
[CAUTION: Non-UBC Email]
External Email - Use Caution
He
External Email - Use Caution
Hello!
I am trying to run recon-all but it only converted the original image to .mgz
and finished without error. I checked all other folders and it's empty.
Attached please find the recon-all.log.
The command line I used is
recon-all -i hc01.nii -s
