but the cluster scheduling software might have other ideas
Bruce
On Thu, 2 Aug 2018, Ortal Nakash wrote:
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on the log it says that cpu time is unlimited.
On Thu, Aug 2, 2018 at 12:58 PM, Ortal Nakash wrote:
Do you mean that I should have use
you need to specify the SUBJECTS_DIR. And yes, you might have needed more
ram as the free is a lot less than the used at the start of recon-all, but
some clusters also have limits on the length of time a job is allowed to
run
cheers
Bruce
On Thu, 2 Aug 2018, Ortal Nakash wrote:
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on the log it says that cpu time is unlimited.
On Thu, Aug 2, 2018 at 12:58 PM, Ortal Nakash
wrote:
> Do you mean that I should have used higher memory?
>
> Is there a way to continue running it from where it stopped or should I
> start it all over a
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Do you mean that I should have used higher memory?
Is there a way to continue running it from where it stopped or should I
start it all over again?
On the Freesurfer Archive there's a suggestion to use the following
command: recon-all -make all -s Ho
hmmm, it looks like it just stopped in the middle of a process. DId it
exceed some wall time limit perhaps?
On Thu, 2 Aug 2018, Ortal Nakash wrote:
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Sure, here it is.
On Thu, Aug 2, 2018 at 12:40 PM, Bruce Fischl
wrote:
can you send it as a
can you send it as a text file (not converted to .docx)?
On Thu, 2 Aug 2018,
Ortal Nakash wrote:
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I copied it in the attached file.
Thank you,
Ortal
On Thu, Aug 2, 2018 at 12:23 PM, Bruce Fischl
wrote:
Hi Ortal
you need to send us t
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I copied it in the attached file.
Thank you,
Ortal
On Thu, Aug 2, 2018 at 12:23 PM, Bruce Fischl
wrote:
> Hi Ortal
>
> you need to send us the recon-all.log, otherwise we don't have the
> information we need to help you
>
> cheers
> Bruce
> On Thu,
Hi Ortal
you need to send us the recon-all.log, otherwise we don't have the
information we need to help you
cheers
Bruce
On Thu, 2 Aug 2018, Ortal Nakash wrote:
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Hi,
I tried to run the recon-all command on a single participant on a high memory
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Hi,
I tried to run the recon-all command on a single participant on a high
memory cluster by typing:
qlogin -q qlogin.himem.q -l h_vmem=20G,s_vmem=20G
recon-all -i 103_T1.nii.gz -s 103T -sd /data/jag/cnds/ortal/freesurftest/C103/
-all
- Most of th
